Computational Tools

Web-enabled ecological group analysis (web-based vegan). Supports the analysis and visualization of trends in dispersal, diversity, and taxonomy as well …

Web server for RNA-seq analysis - going from raw data to therapeutic insights. Supports FASTQ or count matrix input. Provides …

Automated NMR metabolome data processing tool. Processes samples at approximately 1 minute per sample.

Automated metabolome data processing tool for GC-MS data. Ultra-fast processing at approximately 10 seconds per sample.

Automated metabolome data processing tool for LC-MS data. Processes samples at approximately 1 minute per sample using AI techniques.

A comprehensive web-based tool for statistical and functional analysis of metabolomic data. Offers end-to-end solutions from untargeted MS metabolomic data …

Retention Index predictor is a web server that uses machine learning to predict the Kovats' Retention Index (RI) of compounds …

Retention Time Predictor is a web server that takes a submitted structure and uses ML to accurately predict the retention …

A bidirectional neural network to predict EI-MS spectra. Outperforms NEIMS with improved parent ion intensity prediction and is able to …

Predicts "biofeasible" transformation products using ML methods and a large database of chemical constraints. Capable of performing Phase I, Phase …

Web-based Eukaryotic genome annotation system. Fast (30 sec – 3 minutes per genome), interactive genome and circos plots. Provides 60-65 …

Implementation of evolutionary algorithms for game AI behavior, adapted from population genetics methods used in bioinformatics.

Tools and guidelines for implementing FAIR data principles in bioinformatics research. Includes metadata schemas, data validation scripts, and repository templates.

A complete Nextflow pipeline for RNA-seq analysis packaged with Docker containers. Includes quality control, alignment, quantification, and differential expression analysis.